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DRX511766: Illumina MiSeq paired end sequencing of SAMD00729719
1 ILLUMINA (Illumina MiSeq) run: 866,396 spots, 501.5M bases, 311.5Mb downloads

Submitted by: Kyushu univercity
Study: Whole genome sequence analysis of Yersinia pseudotuberculosis strains isolated in Japan
show Abstracthide Abstract
Kawasaki Disease Overview: KD is a multi-systemic vasculitis primarily affecting young children, with unclear etiology. Etiology and Triggers: Believed to involve genetic predisposition and environmental factors, but exact triggers are unknown. YPT Link: Yersinia pseudotuberculosis (YPT), a Gram-negative bacterium, is suspected to be linked to KD, especially in Japan. Historical Context and Global Incidence of KD - English Key Points Identification: KD was first identified in 1967 by Dr. Tomisaku Kawasaki in Japan. Symptoms and Risks: Characterized by prolonged fever, rash, and risk of coronary artery aneurysms. Global Incidence: Highest incidence in East Asia, but reported worldwide. YPT and Its Association with KD Traditional Association: YPT is traditionally linked to gastroenteritis. Epidemiological Links: Correlations between YPT outbreaks and increased KD cases were noted, particularly in Japan. Lack of Genomic Analysis: Detailed genomic analysis of YPT strains associated with KD is limited. Novelty and Aim of the Current Study Study Novelty: First detailed genomic study of YPT strains from KD patients. Methodology: Whole-genome sequencing of 11 YPT strains isolated from KD patients in Japan. Study Aim: To identify unique genomic features of KD-associated YPT strains and position them within global YPT phylogeny. Significance: Aims to enhance understanding of YPT's potential role in KD pathogenesis.
Sample: Yersinia pseudotuberculosis strain KD9
SAMD00729719 • DRS408256 • All experiments • All runs
Library:
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Nextera XT DNA sample preparation kit
Runs: 1 run, 866,396 spots, 501.5M bases, 311.5Mb
Run# of Spots# of BasesSizePublished
DRR527888866,396501.5M311.5Mb2024-09-25

ID:
35359553

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